The value of ship Automatic Identification System (AIS) data coexists with data noises, whereas a tangible noise elimination method plays an important role in data mining. In this study, we first address the big ship AIS data de-noising issue for the 43 million records from 15 legs in the Singapore Strait, in which ship position, speed, and course data are checked and corrected by our proposed Method-I. Moreover, a winding number-based Method-II is developed to select data within irregularly restricted water areas. Based on these data, we particularly design a search-and-cut Method-III to filt...